COBREXA.jl: constraint-based reconstruction and exascale analysis [* Cross-Reference *]

Version 1.0
Miroslav Kratochvíl; Laurent Heirendt; St. Elmo Wilken; Taneli Pusa; Sylvain Arreckx; Alberto Noronha; Marvin van Aalst; Venkata Satagopam; Oliver Ebenhöh; Reinhard Schneider; Christophe Trefois; Wei Gu, 2026, "COBREXA.jl: constraint-based reconstruction and exascale analysis [* Cross-Reference *]", https://lore.list.lu/citation?persistentId=perma:LIST.6ENISJ, LIST Open Repository, V1
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Description
Summary COBREXA.jl is a Julia package for scalable, high-performance constraint-based reconstruction and analysis of very large-scale biological models. Its primary purpose is to facilitate the integration of modern high performance computing environments with the processing and analysis of large-scale metabolic models of challenging complexity. We report the architecture of the package, and demonstrate how the design promotes analysis scalability on several use-cases with multi-organism community models. Availability and implementation https://doi.org/10.17881/ZKCR-BT30 . Contact christophe.trefois@uni.lu , wei.gu@uni.lu (2021-06-07)
***This entry has been automatically imported via OpenAlex by LIST harvest scripts. Please refer to https://doi.org/10.1101/2021.06.04.447038 for the original and latest version of the publication*** (2026-07-01)
Subject Chemistry; Medicine, Health and Life Sciences
Keyword Scalability, Computer science, Constraint (computer-aided design), Scale (ratio), Architecture, Distributed computing, Computer architecture, Parallel computing, Operating system, Engineering
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